DreEX0057934 @ danRer10
Exon Skipping
Gene
ENSDARG00000104542 | ppt2
Description
palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
Coordinates
chr19:19274471-19281131:-
Coord C1 exon
chr19:19281024-19281131
Coord A exon
chr19:19279316-19279370
Coord C2 exon
chr19:19274471-19275226
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTAATATTCTTGATTTTCAGTCA
3' ss Score
7.23
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ACACAGACTATTTGAAGTACCTGTTCCCTCAGTTTGTCAAATCCAACTTGTTTCATGTATGCTATACTGCAGTGGGCCAGAAAATATCAATCTGTAACTACTGGAATG
Seq A exon
TCAGTTTGGTTTCTATGATGATAATGAGACTGTCGTTGAGATGAAAAACCAGAAA
Seq C2 exon
GTGTTTCTGATGGACTTGTTTGGACTGAAGACGTTGTCTGCTCGAGGGGATCTGGCTCTGTGTTCAGTGGAAGGCGTTGCGCATATCTTCTGGCACTCCAATGAAACGGTGTATAAAACCTGCATTGAAAAATGGCTTACATAGATTCTGACACAGTACATGTCTTTTTAATTTTTTAACTCATTCATACAAATGTTTGCACTTTTTTAACAGTATTTTAGCGCATTGCATCAGAACAGACATTTCTGTTACAGTGATTCTGCATCCATGGAAAACCCATAGTAGAGATGCAACATGTATTGTGATTACATGTTTACATTTATAAAAGTAAACTAAACATAATGAACAGCCATCAGTGCCTGAGGGAAACATTCTTCATTTTACAAAAGGAACTGGATCTTAGCTGCTGTTTTACTTTGCTTTTGATGTTTTTATTTCTATAATGTTTTATGTGGATTGTGCACTGCAGTAATATTTATGCCTTTCATTCAAAGGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104542_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(13.6=100)
A:
PF0208910=Palm_thioest=FE(6.8=100),PF121423=PPO1_DWL=FE(54.5=100)
C2:
PF0208910=Palm_thioest=PD(15.8=87.5),PF121423=PPO1_DWL=PD(21.2=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTATACTGCAGTGGGCCA
R:
GAGTGCCAGAAGATATGCGCA
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]