BtaEX6098227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004436 | PPT2
Description
Bos taurus palmitoyl-protein thioesterase 2 (PPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035318]
Coordinates
chr23:27028167-27033129:-
Coord C1 exon
chr23:27033045-27033129
Coord A exon
chr23:27029141-27029195
Coord C2 exon
chr23:27028167-27028972
Length
55 bp
Sequences
Splice sites
3' ss Seq
ATGCCCCAATCTCTTTGCAGCTT
3' ss Score
9.7
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTTGGCGGAAGAACTTTCTGCGTTTGGGCCGCCTGGTGCTGATTGGGGGCCCTGATGATGGTGTCATTACTCCCTGGCAGTCCAG
Seq A exon
CTTCTTTGGTTTCTATGATGCAAATGAGACAGTCTTGGAGATGGAGAAGCAACTG
Seq C2 exon
GTTTATCTGCGGGACTCTTTTGGGTTGAAGACTCTGCTTGCCCGGGGGGCCATAGTGAGGTGTCCAATGGCTGGGATCTCCCACACGGCCTGGCACTCCAACCGTACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGGACCCCTCAGGAACTCCCCGCCCAGAGACTGAGTGGAGCCTTGGATGTCAGGCCTTGGTGTGCCTGTGACCACCTCACTGGTCCCACACTGCCCCCACCAACCAGGGCTCCAGGACCCCTGCTCTGTGAATGACACATCCTGGTCTCCTCCATCTCGTGTCCTCCCTTTTGGGGGTTGCTCCACGCTCTCCCATGCCCCCCAAGGCCAAGGCTGGGAAGTGGGAAACAAGATTAACTTGTGGCTGCTCCTGTTGCTGCTGCTCCTCTGTCTCTGGCTCTACACAAGGAGAACCCAGCCCCTGCCCACCACAGGGTCTCCTTCCAAGCCACTCAGGACATTTTTAGCTTGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004436-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(10.5=100)
A:
PF0208910=Palm_thioest=FE(6.7=100)
C2:
PF0208910=Palm_thioest=PD(15.7=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCATTACTCCCTGGCA
R:
TAAAGGGTACGGTTGGAGTGC
Band lengths:
140-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]