HsaEX6046460 @ hg38
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32157840-32163678:+
Coord C1 exon
chr6:32157840-32157924
Coord A exon
chr6:32162568-32162622
Coord C2 exon
chr6:32162807-32163678
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCCCCCAAATCTCTTTGTAGCTT
3' ss Score
7.59
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TATGGCGGAAGAACTTTCTGCGTGTGGGCCACCTGGTGCTGATTGGGGGCCCTGATGATGGTGTTATTACTCCCTGGCAGTCCAG
Seq A exon
CTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTG
Seq C2 exon
GTTTATCTGCGGGATTCTTTTGGGTTGAAGACTCTATTGGCCCGGGGGGCCATAGTGAGGTGTCCAATGGCCGGTATCTCCCACACAGCCTGGCACTCCAACCGTACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGATATATTCAGGGGTCCCCAGGAACTCCTCGGTCCAGAGACCAAGTGGTGGCCTTGGAAAGCAGATGTCAGGCTTTGGTGTGCCTGTGACCACCTCATTGCTCCCATATTATCCCCCATTTTTAGTAGAGACGGGGTTTTAGTAGAGACTTGGCCTCCCAGAACCCCCTTCCTCTGCTCCTCCATGAATGACAATTCCAGGCCTCCCCTACCTCATGTCCTCTCATTTGGGGGATTGCTCCGTGCTGTCCCTTTCTCTCAAGGCCGAAGTTGGGAAGTGAGAAACCATGTTTTTAACTTGTGGCTGCTTTTGCTGCTGCTGCTCCTCCGTATCTGGCTGTATGGGTGGAGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'12-18,'12-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PD(32.9=93.1)
A:
PF0208910=Palm_thioest=FE(6.7=100)
C2:
PF0208910=Palm_thioest=PD(15.7=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTTTCTGCGTGTGGGC
R:
TTGGACACCTCACTATGGCCC
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains