HsaEX6046460 @ hg19
Exon Skipping
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:9326]
Coordinates
chr6:32125617-32131455:+
Coord C1 exon
chr6:32125617-32125701
Coord A exon
chr6:32130345-32130399
Coord C2 exon
chr6:32130584-32131455
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCCCCCAAATCTCTTTGTAGCTT
3' ss Score
7.59
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TATGGCGGAAGAACTTTCTGCGTGTGGGCCACCTGGTGCTGATTGGGGGCCCTGATGATGGTGTTATTACTCCCTGGCAGTCCAG
Seq A exon
CTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTG
Seq C2 exon
GTTTATCTGCGGGATTCTTTTGGGTTGAAGACTCTATTGGCCCGGGGGGCCATAGTGAGGTGTCCAATGGCCGGTATCTCCCACACAGCCTGGCACTCCAACCGTACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGATATATTCAGGGGTCCCCAGGAACTCCTCGGTCCAGAGACCAAGTGGTGGCCTTGGAAAGCAGATGTCAGGCTTTGGTGTGCCTGTGACCACCTCATTGCTCCCATATTATCCCCCATTTTTAGTAGAGACGGGGTTTTAGTAGAGACTTGGCCTCCCAGAACCCCCTTCCTCTGCTCCTCCATGAATGACAATTCCAGGCCTCCCCTACCTCATGTCCTCTCATTTGGGGGATTGCTCCGTGCTGTCCCTTTCTCTCAAGGCCGAAGTTGGGAAGTGAGAAACCATGTTTTTAACTTGTGGCTGCTTTTGCTGCTGCTGCTCCTCCGTATCTGGCTGTATGGGTGGAGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988-'12-22,'12-21,15-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PD(32.9=93.1)
A:
PF0208910=Palm_thioest=FE(6.7=100)
C2:
PF0208910=Palm_thioest=PD(15.7=87.5)
Other Inclusion Isoforms:
ENSP00000320528, ENSP00000354608f10263A, ENSP00000364279, ENSP00000364285, ENSP00000378894, ENSP00000388444, ENSP00000395242, ENSP00000402642, ENSP00000405631, ENSP00000406496, ENSP00000406566, ENSP00000433061, ENSP00000433272, ENSP00000433696, ENSP00000436963, ENSP00000447169, ENSP00000448072, ENSP00000448877
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTTTCTGCGTGTGGGC
R:
TTGGACACCTCACTATGGCCC
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)