RnoEX6061564 @ rn6
Exon Skipping
Gene
ENSRNOG00000000435 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:RGD Symbol;Acc:620375]
Coordinates
chr20:4381455-4387170:-
Coord C1 exon
chr20:4387086-4387170
Coord A exon
chr20:4382418-4382472
Coord C2 exon
chr20:4381455-4382252
Length
55 bp
Sequences
Splice sites
3' ss Seq
CTGTGCACGTGTCTTTGTAGCTT
3' ss Score
7.99
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
CATGGCGGAAGAACTTCCTTCGTGTGGGCCGTCTGGTGCTGATTGGGGGTCCGGACGATGGAGTCATCACTCCCTGGCAATCTAG
Seq A exon
CTTCTTTGGTTTCTATGATGCCAACGAGACGGTCTTGGAGATGGAGGAACAGCCG
Seq C2 exon
GTGTATCTTCGAGACTCTTTTGGGTTGAAGACTCTCTTGGCCCGGGGGGCCATAGTGAGATGCCCCATGGCTGGGGTCTCTCACACCACCTGGCACTCCAATCGCACGCTCTATGACGCTTGCATTGAGCCCTGGCTCTCCTGAAGACGTCCTCAGGGCTCTCCAGGAATTCCCCAGCCCAGAGATCAAGTGGTGGCCTTCTGGCGTGCCTGTGACCACCTCGTCGCTCCCACACTGCCCCACCTCCCCACCAGGGCTCCCAAACCCTCCCCTCTGCTCCTCTGTGAATGACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGTCTCCATGCTCTCCCTTTCTGCCATGGCTGAGGTTGGGAAGCAAGCACCAGGTTTTTAACTGTGGCTTCACCGCTGCTGCTGTTGCTTCTCCGGGTCTGGCTGTACCGGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCCAGGCCACTCAGGACATTTTTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000435-'22-26,'22-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(10.3=100)
A:
PF0208910=Palm_thioest=FE(6.6=100)
C2:
PF0208910=Palm_thioest=PD(16.6=93.8)
Main Skipping Isoform:
ENSRNOT00000000497fB11260
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTTCCTTCGTGTGGGC
R:
CCATGGGGCATCTCACTATGG
Band lengths:
147-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]