BtaEX6098248 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27119616-27128858:-
Coord C1 exon
chr23:27128595-27128858
Coord A exon
chr23:27121046-27121414
Coord C2 exon
chr23:27119616-27119909
Length
369 bp
Sequences
Splice sites
3' ss Seq
CTCGCCCTGCCTCTTCCCAGGGT
3' ss Score
9.2
5' ss Seq
TGGGTACAT
5' ss Score
1.38
Exon sequences
Seq C1 exon
TGATTGACGGCCCCCAGGACCTCCGCGTGGTGGCTGTGACACCAACCACACTGGAGCTCAACTGGCTGCGCCCCCAGGCTGAAGTGGACCGGTTTGTGGTGTCCTACGTCAGTGCTGGCAACCAGAGGGTGCGGCTGGAAGTGCCCTCTGAGGCAGACGGGACGCTGCTGACCGGCCTGATGCCAGGTGTAGAATACGTGGTGACCGTCACTGCCGAGCGGGGCCGGGCAGTAAGCTACCCAGCTTCCATCAGGGCCAACACAG
Seq A exon
GGTCCTCCCTCTCAGGCCTCTTGGGGGCCACTGATGAGCCTCCTCCCTCAGGCCCTTCAACGACTCAAGGGGCTCAGGCCCCTGTCCTGCAGCAGCGCCCCCAGGAGCTGGCCGAGTTGAGGGTGCTGGGCAAAGACAAGACAGGGCGCCTCCGAGTGGCCTGGACCGCCCAGCCTGACACCTTTACCCACTTCCAGCTGCGCCTACGGGTGCCCGAAGGGCCAGGGGCCCATGAGGAGCTACTGCCAGGGGATGTCCGTCAGGCTCTGGTGCCCTCACCCCCTCCCGAATCCCCCTACGAGCTGTCACTTCGTGGGATCCCTCCCAGTGGCGAGCCCTCTGCCCCTCTCATCTACCAAGGCATTATGG
Seq C2 exon
ACAAGGATGGGGAGAAACCTGGGAAACCCTTGGCCCCACCTCGCCTGGGCAAGCTGACAGTGACAGACGTGACCTCGGACTCCCTGCTTCTGCACTGGACAGTCCCTGAGGGCGAGTTCGATTCCTTTGTGATCCAGTACAAAGACAGGGACAGGCCCCAGGTGGTGCCTGTAGAAGGGCCCCAGCGCTCAGCCCTCATCTCCAACCTGGACGTCGGCCGCAAGTACAAATTTGTCCTATACGGGCTCGTGGGCAAGAAGAGGCACGGCCCCCTGGTGGCTGAAGCCAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.806 C2=0.333
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NO
C2:
PF0004116=fn3=WD(100=79.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACCAACCACACTGGAG
R:
CAAAGGAATCGAACTCGCCCT
Band lengths:
358-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]