MmuEX0048438 @ mm10
Exon Skipping
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34678856-34683577:+
Coord C1 exon
chr17:34678856-34679119
Coord A exon
chr17:34681954-34682322
Coord C2 exon
chr17:34683284-34683577
Length
369 bp
Sequences
Splice sites
3' ss Seq
CCCGCTCTGCTCCTTCCCAGGGT
3' ss Score
9.46
5' ss Seq
TGGGTACAT
5' ss Score
1.38
Exon sequences
Seq C1 exon
TGATCGATGGTCCTCAGGACCTCCGGGTGGTAGCTGTGACCCCGACCACACTGGATCTTAGCTGGCTGCGCCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTATGTCAGTGCTGGAAACCAAAGGGTGCGACTGGAAGTTCCCCCTGAGGCAGACAGGACTCAGCTAACCGATCTGATGCCTGGTGTGGAGTATGTGGTGACTGTCACTGCAGAAAGAGGCCATGCAGTCAGCTACCCAGCTTCTATCAGGGCGAATACAG
Seq A exon
GGTCCTTACCCTCTGGCCTCTTGGAGGCTACTGATGAGCCTCCTCCCTCGGGCCCCTCTACAACCCAAGGGGCCCAGGCCCCTATCCTGATCCTGGAGCACCACCCGCTGGGAGAGTTGAAGGTGCTGGGCAGAGACAAGGCAGGGCGCCTCAGTGTGGCCTGGACTGCCCAGCCTGACAGCTTTGCCCACTTCCAGCTGCGTATGCAGGTGGCCGAGGGGCCCTGGGCTCACGAAGAACTGCTACCAGGAGACGTCCAGCAGGCTCTGGTGCCCCCACCCCCTCCCGGAGCCCCCTACAAGCTATTCCTCCATGGGATCACCCCTGGGGGCAAGATCTCTGTTCCTATCACCTACCAAGGCATTATGG
Seq C2 exon
ACAGGGCTCAGGAACAGCCTGGGAAGCCATCAGTCCAGCCACGCCTGGGTGAACTGACAGTGACAGGCCTGACCTCTGATTCCCTGCTCCTGCACTGGACTGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCAGGCGATATCCGTGGAGGGACCCCAGCGTTCTACACCCATCTCAGGCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCATGGCCCACTTATGGCTGAAGCCAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-'7-6,'7-5,12-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.371 C2=0.404
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NO
C2:
PF0004116=fn3=WD(100=78.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGTGCGACTGGAAGTT
R:
GTTCCAAGCCTGAGATGGGTG
Band lengths:
355-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types