MmuINT1033529 @ mm10
Intron Retention
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34678856-34682322:+
Coord C1 exon
chr17:34678856-34679119
Coord A exon
chr17:34679120-34681953
Coord C2 exon
chr17:34681954-34682322
Length
2834 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CCCGCTCTGCTCCTTCCCAGGGT
3' ss Score
9.46
Exon sequences
Seq C1 exon
TGATCGATGGTCCTCAGGACCTCCGGGTGGTAGCTGTGACCCCGACCACACTGGATCTTAGCTGGCTGCGCCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTATGTCAGTGCTGGAAACCAAAGGGTGCGACTGGAAGTTCCCCCTGAGGCAGACAGGACTCAGCTAACCGATCTGATGCCTGGTGTGGAGTATGTGGTGACTGTCACTGCAGAAAGAGGCCATGCAGTCAGCTACCCAGCTTCTATCAGGGCGAATACAG
Seq A exon
GTACGGTGGTCCTGGCATTCCAGATGTTAGGGAAGAGCCTGGTTTCTGAGACTGGGGGTCCTTTCCTTGGGCACCCAGGCTGGAGGGTCAGAGATATCTGTGGCGATCCCAGAACACCTGCTACAGCCTTGCTCTCTTCTAAAGTCAACAGGGAAACAGCCTTTAGGTTCTCAGAGTCCTATAGGAAGCTTGAAGGTTAGACTGTGGGAAGGACCGCCTCCTGGGAAGGAAGCAGTAGACAGAAGATGCTGTGATCCACCCAGGGGACGGCAGGTCTTATCCTAATTTAGTTACTAAGTGGACAGCTTGATGTGGGTACTAGAGTAAGTCATAGGTCATGGTCCTGCTGATTTTTGGACTGGGGTTGTCTGGGGTTGGGTCTCAGAGCGATCATTTCCTACCAACACTCAAGGTTTCTTAACAGACACTCAGATGGATCTTTCTTTGCTTTTCCTGGGACATGGCGACACCCTCGGCGTAGCTCACGTTTTCATCCCCCTTTTCTGTTCTCTCCATCAGATACACGCCCCACCTGCTGGCTTTTTTTTTTTCTTTCTAGGGTACCAACAGTGGCAGGCTTGGAAGGCAAAGGAGTGGGTGGGGCTTGGGGACGCTAATTTCTCTTTTTAGGTGGGACTGGGGCTCAGAGAAGAAGCCTCATCCCCAGTTGGGGGAGCAGAGCGGTGCGGTGGGGGAACCTGACACTGACCCACTGTCCCCTCCCCCTTTCTCGCTTGGCAGCACCAGGCCACTACAGTTACCCGGAGGTGCGCCCCCCAGCCCCGCCCCCCAACCCCCGTCCCCGGCCTCGATGGCCCTCCCGGCCCTTGCCGTCCCCAGAGACGGACGAGAAGGAGTGGCATCTCCGGCCGAGACTGCCCCAGCCCCCTCGACGGCCGTGGGGTAACCTGACGACTGAACTGAGCCGCTTCCGCGGCACAGTACAGGACCTGGAGCATCACTTGCGAACCCACGGCTATCCACTGCGCGCCAACCAGACTTACGCATCGGTGGCGCGCTACATCCATGAGTTCTTGAAGCGTCATCAAACAGCGGGTGCCCCAGCATCCCAGCCACGTCACCCTCACCCCACCACTAGTCCCACCCAGAACACCAGGAAGCGGGACTCGGAGCAGGGTGCTGTGGGCCCAGCATCCGATGGTGCACACCCGGTGACTACAGCGCGCCACCCGAAACCGGAGGTGCTGGGCAGTGCAGCCGACGGCTCACTGATTGTGTCCCTGGACGGGCTCCGTGGTCAGTTCGAGCGCGTGGTGTTGCGCTGGCGGCCACTGCTACCAGCCAAGGGCCCCAGCGGGGAGCTGACTGTGGATGGTTCTGAACGCACTGTCCGCTTGCCGAACCTCAGGCCCGGGACTACTTACCACGTGGAGGTCCATGGGGTACGGGCAGGACAGACTTCCAAGTCCTACGCCTTCATCACCACCACCACCACCACCACCACAGGTAGTGTGGGCTGGGGCCCTGGACTGCCCACCCCCTGTCTAGTGTCACCTGCCTTCAGGATTGTACTTGCTTATTCCTGCTACCTCACTGCTTAGGCCTCCGCCCCTCACCATGCCCCCCCTCCCCCACCCCCCAGTCTACCTGGCCCAGGCTGCAGGATACTTCCACAGACAGCTGCTCTCCACTGTCACAAAAACCTACCCCATCCCAGGGTCCTGGCATCCTCCTGAGGATAATCAAAGCCAAATAGACCCAGTTTGTGGAGTTCCCTGGCTCACACGTGGGTTCCCAAGCTCTTTGGCAGCGCCTGCTATTGCCAGGCAAGTTCAACATCTTGACATAGCGACACAATATTGTCTGCAAAATTCATACTCAAGTACCTTGCACTTGAGTTTGTTTTTTTTTTTTTTTCCCTAATTGGGAAAGGGGAAAGAAAAACAAAACAACCTAAAACCACAAAAAGCACCATCTCACAATGTTTAGAGCAAGTTAGAGTTTTGTGTAAGGCTGCACTCAGAGCTGACCCGCAGTTAGGAAGCTTCCCGTGCACACAACAGAAGGCCTCGCGGTGGCGTGTGCCGTTTCAGTGGATGGGGTTGAAACCAGAGATTCCCACTCTGACTCACTGCGGCGAGGGTGCCTGATGCCTGTGGTCTGTGGTTATTTCTCACAAGTTGGCTTTGACCTTGACGGGATGCAGCAGAACGGCTTGAGGGGTGGCCTTGAAAGCCATCGGGGCCGCGTGTGAATGGTGGGAGGTGAAACCACGGGGTTTCCTGAACCGCTTTCCCAGACTTGGCTCCCCCTCCAGCTGGTTTCTCCCACAGGACTGATGCCTGGCCCAGGGACAGGGTGCTTTGTGGCTGCAGGGTCGGGGTGGACCTGTTCTTCCTCCTTAGGGCCCAGATGCCACAGGAATTGGACCTCCGTCCACCCTCGCACCCTGTTTGCGCTCCACCCTTTCCTTCCTAACAACACAACCCCTCCTTTCTTGCAGGCTCTCACTACAACACTAATGGAAGGTGGAGAGACACCAGTGGGGGTGGGGGTGGGGGTGGCGGCACGGACATTTGGAGCTTGAGGTCGGGGAAGCCTCTAGTAGGGAGGGAATAGCAGGTTTTATCTGTCACTGCCTGGCTGCTCCGGAATGAGCTCCACGGGGAGGACTCCATTTGGAGGACTCGGCCAAATATGGGAGAAGAAGGCTGAGGAGCAGCTTGGGAGAGGGGAGGGAAGCCTTCTAGCTCTCAGAGGCTGGGGGGCACACTTGGGGACTCCGGGTGCCCTTCCTAATCTCATGCTCCACTCTCCTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTCCTTACCCGCTCTGCTCCTTCCCAG
Seq C2 exon
GGTCCTTACCCTCTGGCCTCTTGGAGGCTACTGATGAGCCTCCTCCCTCGGGCCCCTCTACAACCCAAGGGGCCCAGGCCCCTATCCTGATCCTGGAGCACCACCCGCTGGGAGAGTTGAAGGTGCTGGGCAGAGACAAGGCAGGGCGCCTCAGTGTGGCCTGGACTGCCCAGCCTGACAGCTTTGCCCACTTCCAGCTGCGTATGCAGGTGGCCGAGGGGCCCTGGGCTCACGAAGAACTGCTACCAGGAGACGTCCAGCAGGCTCTGGTGCCCCCACCCCCTCCCGGAGCCCCCTACAAGCTATTCCTCCATGGGATCACCCCTGGGGGCAAGATCTCTGTTCCTATCACCTACCAAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327:ENSMUST00000087399:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=NA C2=0.371
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types