HsaINT1044861 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32085750-32089048:-
Coord C1 exon
chr6:32088785-32089048
Coord A exon
chr6:32086119-32088784
Coord C2 exon
chr6:32085750-32086118
Length
2666 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTCACCCTGCCCCTTCCCAGGGT
3' ss Score
8.65
Exon sequences
Seq C1 exon
TGATCGATGGGCCCCAGGACCTCCGAGTGGTGGCTGTGACACCGACAACACTGGAGCTTGGCTGGCTGCGTCCCCAGGCTGAGGTGGACCGATTTGTGGTGTCCTACGTCAGTGCCGGCAACCAGAGGGTGAGGCTGGAAGTGCCCCCTGAAGCAGACGGGACGCTGCTGACTGACCTGATGCCAGGCGTAGAATATGTGGTGACTGTCACAGCGGAGCGGGGCCGGGCAGTCAGCTACCCAGCTTCTGTCAGGGCCAACACAG
Seq A exon
GTATGGCTGGCCAGAGGTTAGGGAAGGGCCCTGGTTTCCCAGCCTTGGATCCTCCTCCTCAGGAGCCCAGGCTCAGGGCTCACAGACTCCTCTGAATGCTTCTGGCAGGTGTGTGGCAGTCTCGAGGCACCTGCTGGGGGCCTTGCTCTGTCCTGAGGCCACTGGGGAGACAGAGCCCTCAGATGCCTGGAGTCCTGTAGGAAGGTTATTACAGGTTAGCCTATGAAAGGAATGGCCCCAGGGAGAGAAGTGAATAGGAGATGCTGCCTGATCCAGTCAGTTAAGGGAGGTTCTTTTTTAAATTTAGGTACCGGGACAGGCCTTGTGCTGATAGATCTTGTGGGACTGGAATTAGGCAGATTAGAGATCATCAGTCCTGTTGACTTTTGGATTGGGATTGCTGGGAGGTGGGTCTCACAGCAGTGATTTTCCACTAAACCTCGAGGTTTCTTAACAGATACCTGGATATTTTTCTTTTCCTGTGACAGGGGGACACCCACCTCGCTGTAGCTCATGTTCTCTTCCCCGACTCCCCTTTCTCTCCTTCAGCTACAGGGCCCCACCCACGGGCTTCTCTCTTCTTTCTAGGGCACCAACAGTGGTGGGCTTGGAGGGGAATGGGGGGGCTGCGGGACACTGACCGATTTCCCTCCGTTCTCTTTCCAGGTGGGGCTGGGGCACAGGGAAGAGGCCTCTGGCTCTGGTGGGAGGGATCGAGGGAGGGGCTGCCGCGGGAAGGAGTGCCGGGAGGGAGCTGCCACTGACCTGTTCTCCCCTTTTTTGCCCCTGGCAGCACCAGGCCACTACAGTTACCCGGAGGTGCGCCCCCCAGCCCCGCCCCCCAAGTCCCGGCCCCGGCCAGCCCCAGCCCCGCGGCCCCCACGGCCCCCTTGGCCCTCGAGGCCAGCAGAGGAAAGGGAGGAGGAGTCCCCGCCCAGGCCAAGCCTGTCCCAGCCCCCACGGCGGCCTTGGGGCAACCTGACGGCCGAGCTGAGCCGTTTCCGCGGCACGGTGCAGGACCTGGAGCGCCACCTGCGGGCTCACGGCTACCCACTGCGGGCCAACCAGACTTACACGTCGGTGGCGCGCCACATCCATGAATACTTGCAGCGGCGTCTGTTGGCCGCCGCCCCAGCCGGCTCCCCCGCACCCCCGCCCCGCCACCCCCGCCCCACCGCCAGCCCTGATCCCGGCACCAGGAAACGGGACTCCAACCAGGGAATCTACGGCCTCTCGCCTGAAGGCGTCGACCGGGTGGCTGCGTCCCGCCACCCCAAGCCAGAGGTGCTGGGCAGTTCCGCCGATGGCGCGCTTCTCGTGTCTCTCGACGGGCTCCGCGGCCAGTTCGAGCGCGTGGTGCTGCGCTGGCGGCCTCAGCCGCCTGCAGAGGGCCCCGGCGGTGAGCTGACTGTGCCGGGCACCACGCGCACCGTCAGCCTGCCCGACCTCAGGCCCGGCACCACCTACCACGTGGAGGTCCACGGGGTGCGGGCGGGGCAGACCTCCAAGTCCTACGCCTTCATCACCACCACAGGTAGTGTGGGCTGGGGCCACGGGACACCTATCCCTTGTCCAGCCTCACCTGCCGTTGGAGCCTGCATTCATGAATTCCTCCCACTGCCACCCCCCACTGCCCCCTTCTACCTTCAGGCCCTACCTGGCCGGGGCTCCAGGGGGCCCCCAGGACAAAGCACGAGTCCATTGTCCCTAGAAGACGTCCCCACCCCAGGGTCCTGGCATCCATCCTGTGGATGCCTAAGGTCAAGGCAGCGCCTTCTTTGGGGTTTCCCGGGACACTTCCAGGATTGTTATTTTAGGCAATAGAGGGTGATGTGGTTGGGGCACCTGCAAAGATTCACTGGAGCAGTTTGAGTGGGCTGGGAATTGAAAACAGTGATTCCCGTTCTGACTCACTGTGGTGAGAGTGGCTGAAGACTGTGGTTAGTGGTTACTGTTTTCCACAATTTGGCCTTGACCTTGAAGGGACACATCAGAACTGCGTGGGGGTGGCCTGGGTGCCATCAGGCAGCAACTGTATATTGGGGAGGTGAAACCACTGCTTCTTAAGCTGGCTTTTCAGACCCCCTGGCTCACTTTATGCTGGTCTCTCCCACAGGAACGATGTCTGGGCTTGGGGAAAGGGCACCCTGTGGCTGCTGTGGGGAGGGTGGTGGACCTCTTCTTCCCCCATAGGGCCCAGATGCCACCTGACCTGGATGTCCACCCCCACACCCTCTCTCTCTTCCCACTGCCCACTCTCCTCTTGCATCCTCCCTCTCTAACACCACTGTCTTTCTTCCAGGCTTCTCACTGCAGCACTAATGGAAGCCACCTGACCACCACCCAGTGGGGGGGATGTATGTGGGGAGGGACATGGAAGTCTCCGGGGGCTGGAGGTCATGGAAGCCTTGTGGGGTGAAGGATAGCAGGCTTTATTTTACCTATTACCTGCCTGAAGCACAGGCCCGTCTGCTCAGGAATGTGGTAGATGGGGGTGTTTGGAGGATTGGCTGACCTTTGGGAGGAGGGAGTGGCCCAGGTGAGGGAACCAGAAGTAGAAGTAGAACAAGGCTCTTAGAGGCTGGAGGGCAGAACCTGGGGACTGGGGATTCCTTTCTAGTTCTCATACTGGACTCTCCTCTTTTTCTCACCCTGCCCCTTCCCAG
Seq C2 exon
GGTCCTCACCCTTGGGCCTCTTGGGGACTACCGATGAGCCTCCTCCCTCAGGCCCCTCGACGACGCAAGGGGCCCAGGCTCCTCTCCTGCAGCAGCGCCCCCAGGAGCTGGGAGAGTTGAGGGTGCTGGGCAGAGATGAGACAGGGCGCCTCCGTGTGGTCTGGACCGCCCAGCCTGACACCTTTGCCTACTTCCAACTGCGCATGCGGGTGCCCGAGGGGCCGGGGGCACATGAGGAAGTGCTGCCAGGGGACGTCCGCCAGGCTCTGGTGCCTCCACCCCCTCCTGGAACCCCGTATGAGCTGTCACTTCATGGGGTCCCTCCTGGGGGCAAGCCCTCTGACCCCATCATCTACCAAGGCATTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.788
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains