BtaEX6098268 @ bosTau6
Exon Skipping
Description
Bos taurus complement component 4A (C4A), mRNA. [Source:RefSeq mRNA;Acc:NM_001166485]
Coordinates
chr23:27176645-27177181:-
Coord C1 exon
chr23:27177092-27177181
Coord A exon
chr23:27176911-27177009
Coord C2 exon
chr23:27176645-27176728
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCTGGGCCCCTGACTTCAGGGA
3' ss Score
6.49
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGCACAAGTGTTCTGTGTTTTATGGGGCACCACGTAAGAGCAAACTCTTGTCCACGTTGTGCTCTGCGGATGTCTGCCAGTGTGCTGAGG
Seq A exon
GGAAGTGCCCTCGACAGCGCCGGGCCCTGGAGCGTGGGCAGCAGGACTTGGAGGGTTACCGGATGAAATTCGCCTGCTACTCTCCCCGAGTGGACTACG
Seq C2 exon
GCTTCCAGGTTAAGGTTCTCCGAGAAGACAGCAGGGCTGCTTTCCGCCTCTTTGAGACCCGTATCACCCAAGTCCTGCATTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037533-'49-50,'49-48,50-50=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.8=22.6)
A:
PF0175916=NTR=PU(9.9=32.4)
C2:
PF0175916=NTR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCTGTGTTTTATGGGGCA
R:
TGAAATGCAGGACTTGGGTGA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]