DreEX0071052 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16758517-16759068:-
Coord C1 exon
chr16:16758979-16759068
Coord A exon
chr16:16758745-16758837
Coord C2 exon
chr16:16758517-16758600
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTGATCTTCATTTCACCAGGAG
3' ss Score
6.75
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
ACAGGAGATGTTCAGTGTTGTACAGCGCCCCCAAGAGGAGCAAGATGGTTTCCGTCCTGTGCTCAGATGACGTGTGTCAATGTGCAGAAA
Seq A exon
GAGGTTGTTTCACAGAGAAGAAAACCATTGAGATGGAAATCACCAAAACTGATAGATTTGATTATGCTTGTTACCATTCCAACACCGACTATG
Seq C2 exon
CATTTGAAGTCACTGTGAATTCAGTAACCGAAGAGAGCAATTTTATATTATATTCAACATCTGTGAACGTGGTTCTCCGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'46-44,'46-41,47-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.9=25.8)
A:
PF0175916=NTR=PU(9.0=31.2)
C2:
PF0175916=NTR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATGTTCAGTGTTGTACAGC
R:
TCGGAGAACCACGTTCACAGA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]