GgaEX1012085 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:45077-45856:-
Coord C1 exon
chr16:45767-45856
Coord A exon
chr16:45463-45552
Coord C2 exon
chr16:45077-45160
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTGATGTTGGGGGTCCCCAGGGG
3' ss Score
5.74
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GACAGCGCTGCACCGTCTTCTACAACGCCCCCCAAAGGAGCAGCACCATCGCCACGCTGTGCTCCCCCAAAATCTGTGAATGCGCCCAAG
Seq A exon
GGGGGTGTCCCCACGCCCAAAGGAGGACACAGGAGGTGACAGCTGATGACCGCCACGACTTTGCCTGCTACAGCCCCCGCGTGGACTATG
Seq C2 exon
CACTGGTGGTTCGGGTGCTGTCCCAGAGTGAGATAGGGGCTTTTGTGGCGTTTGAGACGGAAATCAAGGAGGTGCTGCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-'44-60,'44-58,45-60
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.8=22.6)
A:
PF0175916=NTR=PU(9.9=35.5)
C2:
PF0175916=NTR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGTCTTCTACAACGC
R:
CTTCAAGCAGCACCTCCTTGA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]