BtaEX6098278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005589 | STK19
Description
serine/threonine-protein kinase 19 [Source:RefSeq peptide;Acc:NP_001091466]
Coordinates
chr23:27198236-27199921:-
Coord C1 exon
chr23:27199782-27199921
Coord A exon
chr23:27198495-27198592
Coord C2 exon
chr23:27198236-27198383
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTCATCTCCACTCTCTTAGGCA
3' ss Score
6.86
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTCCTCAAAGCTTGTGATGGCCGCCCATATGCTGCCGCAGTACAGAAGTTTCTGGCTTCCGTGCTTCCAGCCTGTGGTGACCTTAGCTTCCAGCAAGACCAAATGACACAGACCTTTGGCTTCAGGGACCCAGAGATCAC
Seq A exon
GCAGCTGGTCAAAGCTGGGGTGCTCACTGTCCGAGATGCTGGAAGTTGGTGGCTCGCAGTGCCTGGAGCTGGGAGGTTCATCAAATATTTTGTTAAAG
Seq C2 exon
GACGGCAGGCTGTCCTCAGCATGGTCCGGAAGGCCAAGTACCGGGAGCTACTCCTTTCAGAGCTCCTGGGCCGGCGGGCACCTGCCTCGGTGCGACTCGGCCTCGCCTACCACGTACATGACCTCATTGGGGCCCAGCTGGTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005589-'12-14,'12-12,21-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(21.2=100)
A:
PF104944=Stk19=FE(15.2=100)
C2:
PF104944=Stk19=FE(22.6=100)
Main Skipping Isoform:
ENSBTAT00000007341fB6801
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACCTTTGGCTTCAGGG
R:
GCCCCAATGAGGTCATGTACG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]