MmuEX6077221 @ mm9
Exon Skipping
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34961459-34969097:-
Coord C1 exon
chr17:34968958-34969097
Coord A exon
chr17:34961696-34961793
Coord C2 exon
chr17:34961459-34961606
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGGCTGCCTACCACCTGCAGGCA
3' ss Score
7.62
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
Seq A exon
GCAGCTGGTGAACGCTGGGGTCCTCACTGTCCGAGATGCTGGAAGCTGGTGGCTGGCTGTGCCTGGAGCTGGGAGATTCATCAAGTGCTTTGTTAAAG
Seq C2 exon
GGCGCCAGGCTGTACTGAGCATGGTGCGGAAGGCCAAGTACCGGGAGCTTGCCTTGTCAGAGCTCCTGGGCCGCAGGGCCCCTTTGGCAGTGCGGCTAGGTCTTGCCTACCATGTGCACGACCTCATTGGAGCCCAGCTGGTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-'4-10,'4-9,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(20.6=100)
A:
PF104944=Stk19=PD(10.3=18.8)
C2:
PF104944=Stk19=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAAGTTCCTGGCCTC
R:
CAGGAGCTCTGACAAGGCAAG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: