DreEX0075986 @ danRer10
Exon Skipping
Gene
ENSDARG00000086628 | stk19
Description
serine/threonine kinase 19 [Source:ZFIN;Acc:ZDB-GENE-000616-11]
Coordinates
chr3:56534652-56546203:-
Coord C1 exon
chr3:56545968-56546203
Coord A exon
chr3:56537755-56537852
Coord C2 exon
chr3:56534652-56534799
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGAAGTTTTTGTGCCTTCAGGCA
3' ss Score
5.27
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AATGATTTGCGTGAAAACGGCGAGCTGCTGATGTTCCAGCTGGGCTTCGACTCGGAGGCCTTCGCTCTGGTGTTTGCTGAGGATTACAGAGCCAAAGTCCTTCAGGAGGAAGCTGGAAGAAAAACCCTGGGAGCCGCTGAGAAGTTTCTGGATAAGCTCATTCCCGGCTGCTCCGATTTAAGTTTCAACAAAGACAAAATGCTGAAAGAGTTCCTCTTCTCCGACTCTGAGATCAC
Seq A exon
GCAGCTGGTGAAGTCTGGTCTCCTCACTGTGAGAGATGCAGGCAGCTGGTGGCTCTCAATCCCAAACTCTGGCAGATTCATTAAGTACTTCATTAAAG
Seq C2 exon
GGCGTAAAGCTGTACTTAACATGGTGAAGAAATCCAAATACAGTGAAATCTTAAGGACTGAGCTGGAGGAGCGTCGCACAACTGCACAGGTTAAGTTCCAGATGAAGTATCACGTTCATGATATCATTGGAGCAGACTTAGTAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086628-'3-7,'3-5,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(34.7=100)
A:
PF104944=Stk19=FE(14.7=100)
C2:
PF104944=Stk19=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGCTGAGAAGTTTCTGG
R:
GCTCCTCCAGCTCAGTCCTTA
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]