BtaEX6098341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27288092-27288802:+
Coord C1 exon
chr23:27288092-27288169
Coord A exon
chr23:27288496-27288611
Coord C2 exon
chr23:27288716-27288802
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCCCGTCCCTCAACCCCAGGAT
3' ss Score
9.5
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CACTGCACGTGTGTGGATGACTGCTCCAGCTCCAACTGCCTGTGTGGCCAGCTCAGCATCCGCTGTTGGTATGACAAG
Seq A exon
GATGGGCGGCTGCTCCAGGAATTTAACAAGATCGAGCCCCCGCTGATTTTTGAGTGTAACCAGGCATGTTCCTGCTGGAGAAACTGCAAGAACAGAGTAGTGCAGAGCGGCATCAA
Seq C2 exon
GGTGCGACTGCAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCGTGCCCTGCAGACCATTCCCCAGGGTACCTTCATTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676-'25-32,'25-31,26-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGTGTGTGGATGACTG
R:
CGCAAATGAAGGTACCCTGGG
Band lengths:
162-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]