GgaEX1021841 @ galGal3
Exon Skipping
Gene
ENSGALG00000008472 | F1P2X9_CHICK
Description
NA
Coordinates
chr17:2477383-2480597:+
Coord C1 exon
chr17:2477383-2477460
Coord A exon
chr17:2478575-2478690
Coord C2 exon
chr17:2480511-2480597
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGAATGCATCTCCCCTTCAGGAT
3' ss Score
8.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TATTGCGTATGTATAGACGACTGCTCCTCCAGTAACTGCATGTGTGGCCAACTCAGTATGCGCTGCTGGTATGATAAG
Seq A exon
GATGGCCGACTCCTGCCTGAGTTCAACATGGCTGAGCCCCCACTGATCTTTGAGTGCAATCACGCGTGCTCATGCTGGCGGACCTGTAGGAACCGGGTGGTGCAGAATGGGCTCAG
Seq C2 exon
GACTCGATTGCAGCTCTATCGGACGCAAAAGATGGGCTGGGGTGTGCGAACGATGCAAGACATTCCACTGGGAACCTTTGTGTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008472-'41-39,'41-36,42-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTATGTATAGACGACTGCT
R:
TCGCACACAAAGGTTCCCAG
Band lengths:
162-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]