MmuEX6099378 @ mm9
Exon Skipping
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24657541-24659540:-
Coord C1 exon
chr2:24659463-24659540
Coord A exon
chr2:24658534-24658649
Coord C2 exon
chr2:24657541-24657627
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCATCTATTAATAGGAT
3' ss Score
7.44
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TACTGCGTGTGTGTAGATGACTGCTCCTCTAGCACCTGCATGTGTGGCCAGCTGAGCATGCGCTGCTGGTATGATAAG
Seq A exon
GATGGCCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCATGCTGGAGGAACTGCCGCAATCGTGTGGTGCAAAATGGTCTCAG
Seq C2 exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTCCAGGATATCCCACTGGGCACCTTTGTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-'39-36,'39-35,41-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTGTGTGTAGATGACTGC
R:
TCGCAGACAAAGGTGCCCA
Band lengths:
162-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: