RnoEX0031243 @ rn6
Exon Skipping
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1977587-1979425:-
Coord C1 exon
chr3:1979348-1979425
Coord A exon
chr3:1978431-1978546
Coord C2 exon
chr3:1977587-1977673
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGTGGCCATCTGTTAACAGGAC
3' ss Score
8.35
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TACTGCGTTTGTGTAGACGACTGCTCCTCTAGCACCTGCATGTGTGGCCAGCTGAGCATGCGCTGCTGGTATGACAAG
Seq A exon
GACGGGCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCCTGCTGGAGGAACTGCCGCAATCGCGTGGTGCAGAATGGTCTCAG
Seq C2 exon
GGCAAGGCTGCAGCTTTATCGGACACAGGACATGGGCTGGGGTGTGCGGTCCCTTCAGGATATCCCGCTGGGCACCTTTGTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242-'40-42,'40-41,41-42
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTTTGTGTAGACGACTGC
R:
TCGCAGACAAAGGTGCCCA
Band lengths:
162-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]