BtaEX6047458 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105434438-105436475:-
Coord C1 exon
chr11:105436398-105436475
Coord A exon
chr11:105435647-105435762
Coord C2 exon
chr11:105434438-105434524
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCGTGTCTGCCCCAGGAC
3' ss Score
9.99
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGTGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
Seq A exon
GACGGTCGGCTGCTGCCAGAGTTCAACATGGCAGAGCCGCCCCTGCTGTTCGAGTGCAACCACGCCTGCTCCTGCTGGAGGACGTGCCGCAACCGCGTGGTGCAGAATGGCCTCAG
Seq C2 exon
GGCGAGGCTGCAGCTCTATCGGACACAGAACATGGGCTGGGGCGTCCGGTCCCTGCAGGACATCCCACTGGGCACCTTTGTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148-'34-32,'34-31,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCATCGACGACTGCTC
R:
GCAAACAAAGGTGCCCAGTG
Band lengths:
157-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]