DreEX6071353 @ danRer10
Exon Skipping
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1338313-1339001:-
Coord C1 exon
chr19:1338924-1339001
Coord A exon
chr19:1338716-1338831
Coord C2 exon
chr19:1338313-1338399
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTCCCGCAGGAT
3' ss Score
12.72
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
CACTGCAGCTGTACAGATGACTGTTCGTCCAGTAATTGTCTATGTGGGCAGCTCAGCATCCGCTGCTGGTACGACAAG
Seq A exon
GATCATCGTCTCCTGCAGGAGTTTAATAAGATCGAGCCGCCGCTGATCTTCGAGTGTAACATGGCCTGCTCCTGCCACAAGACGTGCAAGAACCGCGTGGTGCAGGCTGGAATCAA
Seq C2 exon
GGTGCGTCTCCAGCTGTACCGCACAGAGAAGATGGGTTGGGGTGTTCGAGCTCTTCAAGATATTCCTCAAGGAAGCTTCATCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325-'30-39,'30-37,31-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
PF0503311=Pre-SET=PD(29.2=79.5)
C2:
PF0085623=SET=PU(15.9=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGCTGTACAGATGACTG
R:
TCGCAGATGAAGCTTCCTTGA
Band lengths:
164-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]