BtaEX6098501 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27479358-27482297:-
Coord C1 exon
chr23:27480429-27482297
Coord A exon
chr23:27479665-27479936
Coord C2 exon
chr23:27479358-27479488
Length
272 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTTGTTCTCTTCAGCCG
3' ss Score
8.03
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCTCTTCCCTAGCTCCTCCAGCCTCTACACCTGGGTCAGAGGAGGCCCTCACAACAGTAGCAGTGCCCCCACCACCTCGCCGGGCAGCAGCCAAGTCTCCTGATCTGTCAAACCAGAACTCGGACCAAGCCAACGAGGAGTGGGAGACGGCCTCTGAGAGCAGCGACTTTGCCAGCGAGCGGCGGGGGGACAAGGAAGCTCCGCCACCAGCACTGCTGACCCCCAAAGCTGTGGGGACTCATGGAGGGAGTGGAGGTGGTGCTGGACCAGGCATCTCAACCATGTCCCGTGGAGATCTGAGCCAGAGAGCCAAGGATTTGAGCAAGAGGAGCTTTTCAAGTCAGCGACCCGGCATGGAGAGGCAGAACCGGCGCCCAGGCCCAAGCAGCAAGTCTGGCGGCGGTGGCGGCAGCAGTGGAGGAGGTGGTGGGGGTCCTGGGGGGAGGGCCGGCCCAGGGCGAGGGGACAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAG
Seq A exon
CCGTCCCCCAGAGGAGCGTCCCCCAGGGCTCCCTCTGCCTCCCCCGCCCCCCAGCAGTTCTGCGGTCTTCCGCTTGGACCAAGTTATCCACAGCAACCCTGCTGGCATCCAGCAGGCTCTGGCTCAGCTCAGCAGCCGCCAAGGAAGTGCAGCTGCGCCAGTGGGGCACCCAAGGCCCAAGCCTGGGCCGCCCCAAGCCCCTCAAGGCCCCTCTCCTCGGCCCCCCACCCGGTATGACCCTCAGAGGGCCAACAATGACGACGTCAATTCAG
Seq C2 exon
ACCCCCATTTCGAGGAGCCAGGGCCGATGGTGAGGGGGGTGAGCGGGACACCCCGGGACTCTGCTGGAGTTAATCCCTTCCCCCCCAAACGGCGAGAGCGGCCACCTAGGAAACCAGAGCTGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682-'22-24,'22-20,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTTCAAGTCAGCGACCC
R:
GCAGCAGCTCTGGTTTCCTAG
Band lengths:
296-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]