RnoEX0070270 @ rn6
Exon Skipping
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5144830-5147724:-
Coord C1 exon
chr20:5145874-5147724
Coord A exon
chr20:5145166-5145434
Coord C2 exon
chr20:5144830-5144960
Length
269 bp
Sequences
Splice sites
3' ss Seq
TGATGCTCTGCCCTCTCTAGCCG
3' ss Score
7.66
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AAGCCCCCTCCCCTAACCCTTCCAGCCTCCACCCCTGCACCCACGGAGACGCTGGCCACAGTCGCAGCTCCCCCACCCCCTCGCCGCACAGCTGCTAAGTCTCCTGATCTGTCAAACCAGAACTCAGACCAAGCCAATGAGGAATGGGAGACTGCATCAGAGAGCAGCGACTTTGCCAGTGAGCGCCGGGGTGACAAGGAGACTCCCCCAGCAGCACTTATAACCTCTAAAGCTGTGGGGACTCCTGGGGGCAATTCAGGTGGGGCCGGACCAGGCATTTCAACCATGTCTCGTGGAGACCTGAGTCAGCGAGCCAAGGATCTGAGCAAGCGGAGCTTCTCCAGTCAGCGGCCAGGCATGGATCGTCAGAACCGGCGCCCAGGCGCTGGGGGCAAGACTGGCGGTGGTGGCAGTAGTGGAGGTGGTGGTGCAGGCCCTGGGGGACGGACTGGCCCAGGACGAGGGGATAAGAGGAGCTGGCCCTCTCCCAAAAACCGAAG
Seq A exon
CCGTCCTCCTGAGGAGCGACCTCCGGGACTTCCTCTGCCTCCGCCACCCCCCAGCAGTTCTGCTGTTTTCCGCCTGGACCAAGTTATCCACAGCAACCCTGCTGGCATCCAACAAGCTCTGGCCCAACTTAGCAGCCGCCAAGGAAATGTAACTGCACCAGGGGGGCACCCAAGGCCTAAGCCTGGGCCTCCCCAAGCCCCTCAGGGCTCCTCCCCTCGGCCCCCAACCCATTATGACCCCCCGAGGGCCAGCAACGCTATCAGCTCTG
Seq C2 exon
ACCCCCACTTCGAGGAGCCAGGGCCGATGGTGAGGGGGGTGGGCGGGACTCCCCGGGACTCTGCCGGGGTTAATCCCTTCCCCCCGAAACGGCGGGAGCGGCCTCCCCGAAAACCGGAGCTGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852-'32-28,'32-25,34-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCAGGCATTTCAACCAT
R:
ATTAACCCCGGCAGAGTCCC
Band lengths:
308-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]