MmuEX6077415 @ mm10
Exon Skipping
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35154466-35157207:-
Coord C1 exon
chr17:35155366-35157207
Coord A exon
chr17:35154792-35155060
Coord C2 exon
chr17:35154466-35154596
Length
269 bp
Sequences
Splice sites
3' ss Seq
TGATGCTCTGCTTTCTCCAGCCG
3' ss Score
7.5
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CCCCCTTCCCTAACCCTTGCAGCCTCTACCCCTGGACCTGAGGAGACACTAACAGCAGCCACAGTTCCCCCACCCCCTCGCCGCACAGCTGCTAAGTCTCCTGATCTGTCAAACCAGAACTCAGACCAAGCCAATGAGGAATGGGAGACTGCATCAGAGAGCAGCGACTTTGCCAGTGAGCGCCGGGGTGACAAGGAGACTCCCCCAGCAGCACTTATGACCTCTAAAGCTGTGGGGACTCCTGGGGCCAATGCAGGTGGGGCTGGACCAGGCATTTCAGCCATGTCTCGTGGAGACCTGAGCCAACGAGCCAAGGATTTGAGCAAGCGGAGCTTCTCAAGTCAGCGGCCAGGCATGGATCGTCAAAACCGGCGCCCAGGCACTGGGGGCAAGACTGGCAGTGGTGGTGGCAGTAGCGGAGGTGGTGGTGCAGGCCCTGGGGGACGGACCGGCCCAGGACGAGGGGATAAGAGGAGCTGGCCCTCTCCCAAGAACCGAAG
Seq A exon
CCGTCCTCCTGAGGAGCGACCTCCGGGACTTCCTCTGCCTCCGCCACCCCCCAGCAGTTCTGCTGTCTTCCGCCTGGACCAAGTTATCCATAGCAACCCTGCTGGAATCCAACAGGCTCTGGCCCAACTTAGCAGCCGCCAAGGAAATGTAACTGCACCAGGGGGGCACCCAAGGCCTAAGCCTGGGCCTCCCCAAGCCCCTCAGGGCTCCTCCCCTCGGCCCCCAACCCGTTATGACCCCCCAAGGGCCAGCAGCGCTATCAGTTCTG
Seq C2 exon
ACCCCCACTTCGAGGAGCCAGGGCCGATGGTGAGGGGGGTGGGCGGGACTCCCCGGGACTCTGCCGGGGTTAATCCCTTCCCCCCGAAACGGCGGGAGCGGCCTCCCCGAAAACCGGAGCTGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393-'38-35,'38-32,42-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCCATGTCTCGTGGAGA
R:
GATTAACCCCGGCAGAGTCCC
Band lengths:
300-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types