BtaEX6098694 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility complex, class I (LOC512672), mRNA. [Source:RefSeq mRNA;Acc:NM_001076841]
Coordinates
chr23:28304695-28306281:+
Coord C1 exon
chr23:28304695-28304970
Coord A exon
chr23:28305794-28306069
Coord C2 exon
chr23:28306186-28306281
Length
276 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTTTGTGTACCACAGAGC
3' ss Score
8.85
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCCCCCACACCCTCCAGTTCACCTACGGCTGTGAGCTCCTGGAGGACGGCAGGACCACGTGGCACTGGCAGTATGGCTATGATGGTGAGGACTACCTGAGCTTGCATATGGACCCTCTGCAATACACAGCAGCCACATTCGTTGCTCAGTACACCAAACAAAAATGGGAGGCCGGTGGGAACTTCATAGAGAGAGACAAGAACTACTTGGAGAAGGAATGCATCCTGTGGTTGTGGAGATACTTGACGTTTGGAGGGGAGAGCTTGAACCGCACTG
Seq A exon
AGCCTCCCAAAACACACATGACTCATCACCGCATCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGAAGATCTCACTGACCTGGCAGCGCAATGGGGAGGACCAGACCCAGGACATGGAGCTTGTGGAGACCAGACCTTCAGGAGACGGAACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAAATACACGTGCCGTGTGCAGCATGAGGGGCTTCAGGAGCCCCTCACCCTGAGATGGG
Seq C2 exon
AACCTCTGAAGACCTCCGTCCCCATCACAGGCATCATTGTTGTCCTGGTTCTCCTCGTGGTCACTAGAGCTGTGATCTGGATAAAGAAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038619-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(46.8=94.6)
A:
PF0765410=C1-set=WD(100=91.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACCCTCCAGTTCACCTA
R:
GGACGGAGGTCTTCAGAGGTT
Band lengths:
293-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]