MmuEX0022302 @ mm9
Exon Skipping
Gene
ENSMUSG00000053835 | H2-T24
Description
histocompatibility 2, T region locus 24 [Source:MGI Symbol;Acc:MGI:95958]
Coordinates
chr17:36142640-36152601:-
Coord C1 exon
chr17:36152329-36152601
Coord A exon
chr17:36151745-36152020
Coord C2 exon
chr17:36142640-36143734
Length
276 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCTACGGCAGACC
3' ss Score
8.85
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCCCTCACACCCTCCAGTTCACATACGGCTGTGAGATGCGGTACAACAGGACCACAGGGCATTGGCAGTATGGCTACGATGGCAGTGATTACCTGACCTTGGACTTGGGCTCTATGCAATATATAGCAGCCACCTTCATTGCTGGCTACACCAAGCGCAAGTGGGAAAACAATGAGTACTGGCTGGAGAAAGAGAAGACCTACTTGGAGAAGGAGTGCATCCTATGGCTGCAGAGATACTTAACCATGGGAGGAAAGAACTTTACCCGAACTG
Seq A exon
ACCCTCCAAAGACAACAGTGACTCATCAGTTCAAACCTAAAGAAAACGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGAGAGGAGCTGACCCAGGACACGGAGCTTGTGGAGACGAGGCCTTCAGGGGATGGGACATTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACATGTCATGTGCAACATGAGGCACTAACGCAGCCCCTTGTTCTGAAATGGG
Seq C2 exon
GTCAGAAGAAAGAACTGGCCTGCTCCATCTGTTCCTGAAGAAGAGAGGCTCTAGGACAGGACCCAGGGACAATGTAAATAGTTTACAGCTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCTACGCTTGCTTATATTGTGTAAGGCTTGCTGCTCTTTTTTTTTTTTTTTTAAGATTTATTTATTTATCTACTATATATAAGTACACTGTCGCTGTCCTCATACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053835_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.167 C2=0.210
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(46.5=94.6)
A:
PF0765410=C1-set=WD(100=92.5)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAGCCACCTTCATTGCTG
R:
CCCAGGCTCTTCACTGAAACC
Band lengths:
296-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: