BtaEX6098766 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30281701-30286078:-
Coord C1 exon
chr23:30285937-30286078
Coord A exon
chr23:30282153-30282244
Coord C2 exon
chr23:30281701-30281824
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATCTCCTTTCTCCTCTCAGCCA
3' ss Score
9.17
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCCCAGCTCGTCCACATGGACATAGGGTACTCTGGGAGGAGTTGATGCATTCAGAATCTGCACCGGAGCCTCCAGATACTCAGCTCCAACCTGTGGCAATGCAGCACAAATCTGCAGTTCTCCAAGGGCCACATGATAGAG
Seq A exon
CCATATCAGTTTCACAGAGTCCTACCCCTTCCCAGAAAGGAAGTCCTCGAGACCAGGAGATGACAGCTACACTGCTTACAGCAGGGTTCCAG
Seq C2 exon
ACTTTAGAGAAGATTGAAGACATGGCTGTGTCCCTAATTCGAGAAGAATGGCTTCTTGATTCATCCCAGAAAGATCCGAGTAGAGATAACAGGCCAGAGAATTATAGAAACATGTTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074-'5-10,'5-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=0.967 C2=0.675
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAGATACTCAGCTCCA
R:
TGGCCTGTTATCTCTACTCGGA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]