MmuEX0053077 @ mm9
Exon Skipping
Gene
ENSMUSG00000063894 | Zfp192
Description
zinc finger protein 192 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21605091-21617175:-
Coord C1 exon
chr13:21617007-21617175
Coord A exon
chr13:21614093-21614184
Coord C2 exon
chr13:21605091-21612831
Length
92 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCTTTCTCCTCCCAGCCA
3' ss Score
6.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTCAACTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAACCTCCAAGTATTCACGTACAATCCTTGGCCACCGTGCCCAAATCTCCAGTGCCCCAGAAACCACAGGACAGGGGAAAGAGGCCAGATTTCACTTACAACG
Seq A exon
CCATGTCCTCTTCTCAGAAACCTACTCCTTCCCAGAAGGGAAGTTCTGGAGATCAGGAAGTGACAGCTAGACTTCTCACTGCAGGGTTCCAG
Seq C2 exon
ATGGCGAGACCAGGAGTGAGAACAAGGAATTATTTCCAAAACAGGGAATATCTCCCGGAATCCAGCCACATGGAGAGGCAACTGCCAAGTGCAATGGGGATGTTATTGTGGGTCTTGCACATGGAGAAACCCAAGACCTTCTGGGCAAACTAGAGAGGCACCAGGGAAATCCCACACAAGAGAGACGACATAAATGTGATGAATGTGGGAAAAGCTTTGCTCAGAACTCAGGCCTTGTTCGCCACTGGAGAATACACACTGGAGAGAAACCCTATCAGTGTACTGTGTGCGGTAAAGCCTTCAGTTACAGGTCGGCCCTTCTTTCCCATCAGGATATCCACAACAAAGTGAAGCGCTATCACTGCAAGGAATGTGGTAAGGCCTTCAGTCAGAACACAGGCTTGATCCTACACCAGAGAATCCACACTGGGGAGAAGCCCTATCAATGTAATCAGTGTGGGAAGGCCTTTAGTCAGAGTGCAGGCCTTATTTTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.652 A=0.806 C2=0.255
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF0013017=C1_1=WD(100=17.4),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=8.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACAGGACAGGGGAAAGA
R:
CTCCATGTGCAAGACCCACAA
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types