HsaEX6046041 @ hg19
Exon Skipping
Gene
ENSG00000198315 | ZNF192
Description
zinc finger protein 192 [Source:HGNC Symbol;Acc:12983]
Coordinates
chr6:28117261-28120162:+
Coord C1 exon
chr6:28117261-28117402
Coord A exon
chr6:28119623-28119714
Coord C2 exon
chr6:28120039-28120162
Length
92 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCTTTCTCCTCTCAGCCA
3' ss Score
6.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG
Seq A exon
CCATGTCTACTTCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGACCAGGAAATGACAGCTACACTTCTCACAGCAGGGTTCCAG
Seq C2 exon
ACTTTGGAGAAGATTGAAGACATGGCTGTGTCCCTTATTCGAGAGGAGTGGCTTCTTGATCCATCACAGAAGGATCTGTGTAGAGATAACAGGCCAGAAAATTTCAGAAACATGTTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198315-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.968 C2=0.476
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0),PF0310514=SPX=FE(23.4=100)
A:
PF0310514=SPX=FE(14.9=100)
C2:
PF0310514=SPX=FE(20.4=100),PF0135222=KRAB=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGTACATGGACATAGGGT
R:
AGGGACACAGCCATGTCTTCA
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)