BtaEX6099825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15830888-15840440:+
Coord C1 exon
chr26:15830888-15831005
Coord A exon
chr26:15832225-15832331
Coord C2 exon
chr26:15840360-15840440
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCCTTCAATTCTAGGCG
3' ss Score
11
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
AAATTAAAGAAGCACATAAAAGGAAAAAAATAATGAAAGAACGGTTTAAACAGGAAGAAAGCATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTACCCAATTGGGAAGTAAT
Seq A exon
GCGTAGTACGAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTTCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG
Seq C2 exon
AACTTTATGAAATCTTCCTCTCAAGAGCAAAGGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATGAAAGAACGGTTTAAACAGGA
R:
CTTCTACATCATTCTCTGAACTTGTT
Band lengths:
170-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]