MmuEX0046398 @ mm9
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38970477-38982342:+
Coord C1 exon
chr19:38970477-38970559
Coord A exon
chr19:38975799-38975905
Coord C2 exon
chr19:38982262-38982342
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCCTTTAATTCTAGGCG
3' ss Score
9.95
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAAGCTAAAAAACGAG
Seq A exon
GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG
Seq C2 exon
AACTTTATGAAATCTTTCTTTCAAGAGCAAAAGAACGTTGGAAAAGCTTCAGTGAATCAAGTTCTGAGAACGACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(2.4=17.2)
A:
PF0056613=RabGAP-TBC=PU(25.3=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTGCGAAATCTGTGGA
R:
CTTCCGTGTCGTTCTCAGAACT
Band lengths:
162-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: