GgaEX7006424 @ galGal4
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19635991-19637110:+
Coord C1 exon
chr6:19635991-19636108
Coord A exon
chr6:19636453-19636559
Coord C2 exon
chr6:19637030-19637110
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCTCCCTGTTCTAGGCG
3' ss Score
12.37
5' ss Seq
CTGGTATGC
5' ss Score
6.73
Exon sequences
Seq C1 exon
AAATTAAAGAAGCACATAAAAGGAAGAAAATAATGAGAGAGCGTTTCAAGCAAGAAGACAATATTGCTAGTGCTATGGTGATTTGGGTCAATGAAATACTACCTAACTGGGAAGGCAT
Seq A exon
GCGTGCTACCCGGAGAGTTCGAGAGCTGTGGTGGCAGGGATTACCACCAAGTGTTCGTGGGAAAGTGTGGAGTCTAGCAGTGGGGAACGAGTTAAATATCACTCCTG
Seq C2 exon
AACTCTATGAAATCTTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538-'16-12,'16-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAAAATAATGAGAGAGCGT
R:
CTTCTACATCATTCTCAGAACTTGTT
Band lengths:
179-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]