DreEX0077398 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5399770-5403354:-
Coord C1 exon
chr12:5403237-5403354
Coord A exon
chr12:5400213-5400319
Coord C2 exon
chr12:5399770-5399850
Length
107 bp
Sequences
Splice sites
3' ss Seq
CGATAATATCTGTTTTTCAGGCG
3' ss Score
7
5' ss Seq
CAGGTTTTC
5' ss Score
-0.25
Exon sequences
Seq C1 exon
AGCTAAAAGAGGCTCAGAAGAAGAAAAAGCAGATGAAAGAAAGGTTTAAACAGGAAGAGAGCATCGCTAACGCCATGGTGGTTTGGAACACTGAAATCCTCCCTAACTGGGAGAGCAT
Seq A exon
GCGTGGCACACGGCGTGTGAGGGATCTGTGGTGGCAAGGTCTTCCTCCCAACGTGAGGGGTAAAGTCTGGAGTTTGGCCGTTGGGAATGAGCTGAACATCACCTCAG
Seq C2 exon
ATTTGTATGAGATCTTTCTGTCGCGGGCCAAGGAGCGATGGAAGAGCTTCAGAGAAACGGGCAGTGAGATTGAGTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(8.9=54.1)
C2:
PF0056613=RabGAP-TBC=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAAAAGAGGCTCAGAAGAAGA
R:
CTGACTCAATCTCACTGCCCG
Band lengths:
196-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]