GgaEX1057312 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82877768-82880387:+
Coord C1 exon
chr4:82877768-82877885
Coord A exon
chr4:82879302-82879408
Coord C2 exon
chr4:82880307-82880387
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATGCATTCTGTTTCGAACAGGTG
3' ss Score
8.06
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGCTTAAAGAAGCCCAGAAGAGAAAGAAGCAACTGGAGGAACGTTGTAAGCTGGAAGATAGCATTGGCAATGCTGTTTTAACTTGGAACAATGAAATCTTGCCCAATTGGGAAACTAT
Seq A exon
GTGTTGTTCCCGTAAAGTTCGAGAGTTATGGTGGCAGGGCATTCCACCGAGCGTGAGAGGCAAAGTCTGGAGCTTGGCAATTGGCAACGAGTTAAACATCACCCATG
Seq C2 exon
AGCTATACGATATTTGTCTGGCTCGTGCCAAAGAAAAATGGCGATCACGTAGCACGGTAGGAGCTGAGGTAGAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'16-19,'16-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=PD(35.4=85.0)
A:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGCCCAGAAGAGAAAGAAGC
R:
CTTCACATTCTACCTCAGCTCCT
Band lengths:
194-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]