BtaEX6032856 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118279817-118286768:+
Coord C1 exon
chr6:118279817-118279934
Coord A exon
chr6:118282738-118282844
Coord C2 exon
chr6:118286688-118286768
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACGCTTCCTTTTTCATCCAGGTG
3' ss Score
10.23
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AGCTGAAAGAAGCCCAGAGGAGGAAAAAGCAGCTGGAAGAAAGATGCAGACTGGAGGAAAGTATTGGAAATGCAGTCCTCACTTGGAACAACGAGATTCTGCCCAACTGGGAAACAAT
Seq A exon
GTGGTGCTCTAGAAAAGTTCGAGATTTGTGGTGGCAGGGAATCCCTCCCAGCGTGAGAGGCAAGGTCTGGAGCTTAGCCATTGGCAACGAGTTAAACATCACTCACG
Seq C2 exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493-'21-10,'21-8,22-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF085986=Sds3=PD(39.1=90.0)
A:
PF0056613=RabGAP-TBC=PU(10.8=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAAGAAGCCCAGAGGA
R:
GTCTCCGCTTCAGAGCCTCC
Band lengths:
194-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]