DreEX0077408 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39422659-39424535:+
Coord C1 exon
chr7:39422659-39422776
Coord A exon
chr7:39423226-39423332
Coord C2 exon
chr7:39424449-39424535
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCACACCATTCCAGGTG
3' ss Score
9.48
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
AGCTGAAAGATGCCCAGAAACGAAAGAAACAGCTGGAGGACCGGTGTAAACTAGAGGAAAGCATTGGCAATGCTGCTCTCACCTGGAGTCAGGAGATATTACCCAACTGGCAAAGCAT
Seq A exon
GTGTTCATCGAAGCGGGTGAGGGATTTATGGTGGCAGGGTCTGCCACCCAGTGTGAGGGGTAAAGTCTGGAGTCTGGCAATAGGAAATGAATTGAACATCACAGATG
Seq C2 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'9-13,'9-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(20.4=100)
A:
PF085986=Sds3=FE(18.8=100),PF0056613=RabGAP-TBC=PU(8.7=54.1)
C2:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAAGATGCCCAGAAACG
R:
CACTTTCAGTTTCCACAGCAGC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]