RnoEX0088810 @ rn6
Exon Skipping
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79412227-79420077:+
Coord C1 exon
chr14:79412227-79412344
Coord A exon
chr14:79413467-79413573
Coord C2 exon
chr14:79419997-79420077
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTCCATTCTGTTCAGGTG
3' ss Score
9.71
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AGCTTAAAGAAGCCCAGCGGCGGAAGAAACAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGAAACGCCGTCCTCACCTGGAATAATGAGATCTTGCCTAACTGGGAAACCAT
Seq A exon
GTGGTGCTCTAAGAAGGTTCGAGACTTGTGGTGGCAGGGAATCCCTCCGAGTGTAAGAGGCAAAGTTTGGAGCTTGGCCATTGGCAACGAGCTGAACATCACTCACG
Seq C2 exon
AGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTGGAGGCTCAGAAGTGGAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400_MULTIEX3-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Skipping Isoform:
ENSRNOT00000058414fB14794
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGGCGGAAGAAACAG
R:
CTTCATTCTCCACTTCTGAGCCT
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]