GgaEX1057312 @ galGal4
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79480119-79501571:+
Coord C1 exon
chr4:79480119-79480237
Coord A exon
chr4:79486013-79486119
Coord C2 exon
chr4:79501313-79501571
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATGCATTCTGTTTCGAACAGGTG
3' ss Score
8.06
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
Seq A exon
GTGTTGTTCCCGTAAAGTTCGAGAGTTATGGTGGCAGGGCATTCCACCGAGCGTGAGAGGCAAAGTCTGGAGCTTGGCAATTGGCAACGAGTTAAACATCACCCATG
Seq C2 exon
GATATTCACATTGTACAGCAAATCTTTGCCACTAGACTTGGCGTGTCGTGTCTGGGATGTGTTCTGCCGTGATGGAGAAGAGTTCTTATTTCGTACAGCCCTGGGAATATTAAAACTTTTTGAAGATATTTTGACCAAAATGGATTTCATTCATATAGCCCAGTTTTTAACGAAGCTACCAGAAGACCTACCTTCAGAAGAATTCTTTACATCTATTGCTGCCATTCAGATGCAAAGTAGAAACAAAAAGTGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546_MULTIEX2-3/9=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(34.4=82.5)
A:
PF0056613=RabGAP-TBC=PU(11.0=54.1)
C2:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCACTCTCCACTACTGCA
R:
TCTGAAGGTAGGTCTTCTGGTAGC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]