BtaEX6100303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018604 | SEMA4G
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (SEMA4G), mRNA. [Source:RefSeq mRNA;Acc:NM_001101117]
Coordinates
chr26:21686451-21687150:+
Coord C1 exon
chr26:21686451-21686566
Coord A exon
chr26:21686714-21686889
Coord C2 exon
chr26:21687089-21687150
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCTCTGACTCCTAGCAT
3' ss Score
6.85
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGATGGCTGGATCCACAAGGCTGTGGTCCTGGGCTCTGGGATGCACATTATTGAAGAGACACAGGTGTTAAAGGAGCCCCAGTCTGTGGAGAACCTGGTCATCTCTCCGATGCAG
Seq A exon
CATAGCCTCTACGTGGGGGCCCCAAGTGGCATCATCCAGCTACCACTGTCCAGCTGCTCCCGCTACCGCTCCTGCTATGACTGCATCCTGGCCCGGGACCCCTACTGTGGCTGGGACCCCAGCACCCATGCCTGCATGGTGACCACCACCATAGCCAACAGGTCCCAAAGTAGCAG
Seq C2 exon
GACAGCACTCATACAGGACATGGAGAGAGGAAACCGAGGCTGCGAGGGCAACAGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018604-'21-21,'21-18,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.068 C2=1.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0143720=PSI=PU(71.9=69.5)
C2:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGCTGGATCCACAAGG
R:
CTGTGTCCCTGTTGCCCTC
Band lengths:
178-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]