MmuEX6033160 @ mm10
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:44998671-44999240:+
Coord C1 exon
chr19:44998671-44998786
Coord A exon
chr19:44998878-44999038
Coord C2 exon
chr19:44999179-44999240
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCTCTCTGAATCCAGCAC
3' ss Score
6.77
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
Exon sequences
Seq C1 exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG
Seq A exon
CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG
Seq C2 exon
GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207-'27-43,'27-41,31-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.409
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0143720=PSI=PU(69.2=66.7)
C2:
PF0143720=PSI=PD(28.8=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGCTGGATCCACAAGG
R:
ATCCCTGCTGCCCTCACAG
Band lengths:
174-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types