DreEX6070272 @ danRer10
Exon Skipping
Gene
ENSDARG00000088143 | sema4gb
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb [Source:ZFIN;Acc:ZDB-GENE-111117-1]
Coordinates
chr12:33732250-33734148:-
Coord C1 exon
chr12:33734033-33734148
Coord A exon
chr12:33733775-33733929
Coord C2 exon
chr12:33732250-33732311
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATTTTGTGATACAGAAC
3' ss Score
6.64
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATGAGGGCTGGTTACAAAGAGCTGTGAAGATTATAGACCGTGTGCACATCATTGAGGAGCTTCAGCTGTTCCAAGAGAAACAGCCCATCATTAACATGGTGATATCACAAAAACAG
Seq A exon
AACAGTATCTATGTGAGCGGCGCTTCTGGACTGGTGCAGGTTCCTCTGTCATCTTGTGAACGCTACACCTCCTGTTACGACTGTGTGTTCGCACGCGATCCGCTCTGTGGCTGGGATGGAAGAATGTGTGCTGAGATAGCATCTTATGCTAACAG
Seq C2 exon
GTCCAGTCTCGTCCAGGACATCCAGATGGGAAGACGAGGCTGTTCTAATATCACAAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088143-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.5=100)
A:
PF0143720=PSI=PU(68.0=65.4)
C2:
PF0143720=PSI=PD(30.0=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGCTGGTTACAAAGAGC
R:
CATCACTTGTGATATTAGAACAGCCT
Band lengths:
178-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]