BtaEX6100926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34357431-34360233:-
Coord C1 exon
chr26:34360135-34360233
Coord A exon
chr26:34357882-34357986
Coord C2 exon
chr26:34357431-34357538
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCCTTCTGCCCAGCGC
3' ss Score
7.49
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
AGTAAATATCGTCAGCATCCCCAGTCGCTCAAGTACACAGCCGTGACAGACACACCCAGCCTCACTCATGCAAAACTCAGCAACCAGATTACAAACGAG
Seq A exon
CGCCTCTATAAAGCAGCGGGGGAAGATGCGAGACACCAGTACACAATGACCCTGGGCCTGCCCGAGTTTGTCCGAGCGAAAACAAACGCGGCCAATCTGAGTGAC
Seq C2 exon
GCAAAATACAAGGAGTCTTGGAGGAATCTCCATGCTCAAGGCTACAAGCTAACAATAGATGCTCTGCCCTTCCAGGCGGCTCGAGTCTCTGGAGACATAGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'38-38,'38-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.7=42.9)
C2:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAATATCGTCAGCATCCCCA
R:
TCTCCAGAGACTCGAGCCG
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]