GgaEX6041034 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:26999714-27001193:-
Coord C1 exon
chr6:27001095-27001193
Coord A exon
chr6:27000175-27000279
Coord C2 exon
chr6:26999714-26999821
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGATCCCCTTTCCAGCGC
3' ss Score
9.89
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGTAAATATCGTCAGCAGCCACATTCCTTCAAGTACACATCGGTGACAGACTCTCCTGGTCTCCTTCATGCAAAATTCAGCAATATGATTGCTAATGAG
Seq A exon
CGCCTTTATAAAGCAGCGGGAGAGGACATTCAGCATCACTATACACCAACACTGGGTCTGCCTGAGTTCACACAAGCAAGAATAAACGCAGCCAACCTCAGTGAT
Seq C2 exon
GTGAAATACAGGGAATCTTGGCATAATCTATGTGCTCAAGGCTACAAGCTGACAATGGAAGCACTCCCTTTCCAGACTGCGAGGGCCTCCAGAGAAATTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'38-37,'38-35,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0088013=Nebulin=PU(57.7=42.9)
C2:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAATATCGTCAGCAGCCACA
R:
CTGGCAATTTCTCTGGAGGCC
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]