RnoEX6007856 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277121086-277123095:-
Coord C1 exon
chr1:277122997-277123095
Coord A exon
chr1:277121518-277121622
Coord C2 exon
chr1:277121086-277121193
Length
105 bp
Sequences
Splice sites
3' ss Seq
TATTTCTAATCTGGGTTCAGCGT
3' ss Score
5.09
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGTAAATACCGCCAGCATCCTGGGTCATTCAAGTACACAGCTGTGACAGACACTCCCAACCTTCTGCATGCCAAGTTCAGCAACCAGATCACCAATGAG
Seq A exon
CGTCTCTATAAAGCAGCTGGTGAGGATGCGCGGCACCAATACACGATGACCCTTGGTCTGCCTGAATTCATCCGAGCCAAAACAAACGCAGCCAACCTGAGCGAG
Seq C2 exon
GCAAAATACAAGGAGTCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTAACGATAGACGCCCTCCCTTTCCAGGCTGCGCGGGCCTCTGGAGACATAGCCAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(53.6=42.9)
C2:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAATACCGCCAGCATCCTG
R:
GGCTATGTCTCCAGAGGCCC
Band lengths:
201-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]