DreEX0051490 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30486763-30487986:+
Coord C1 exon
chr12:30486763-30486861
Coord A exon
chr12:30486947-30487051
Coord C2 exon
chr12:30487675-30487986
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGGATTTTTTTTTGACGCAGTTG
3' ss Score
5.45
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AAAAAGTATCGCCAGAAGGTGGATATGGTGAAGTTCACACAAGTGGCAGATACTCCTTCCATCATGCATGCCAAGAAGAGCCAGGAGCTGCAGAGTGGG
Seq A exon
TTGGCATACAAGGCAGGCACAGAACAGACAATGCACCAGTACACTATAAGCAAAGATGAGCCTCTCTTCAAGCAAGCCAAAGCTAACGCAGAGCTTCTCAGTGAG
Seq C2 exon
GTGAAGTACAAGCAAAAATATGAAATGACAAAAGGGAAGATGATTGGCGTGAAGACTGTGGCAGACGATTCTCAAATGGCCCACTCGACCCATGCTACCAAACTCCACAGTGACCTCAACTACAAGAAACAGTATGAGGACACCAAGACCAAACACAGCGCCTCACTCGATATGTTGACCCTCACCCATGCCAAGAAAGCCCAGGAGCTGGCCACAGAGACAAACTACAAAACATTCTTGCACAAGTACACCATCCTGCCCAGTGATATGAAACTGGAATGGGCCAAGAAAGCCTACGGCTTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.057 C2=0.058
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.0=30.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(53.6=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCCATCATGCATGCC
R:
CTTTCTTGGCATGGGTGAGGG
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]