BtaEX6100919 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34375926-34379088:-
Coord C1 exon
chr26:34378990-34379088
Coord A exon
chr26:34377584-34377688
Coord C2 exon
chr26:34375926-34376033
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTTCTCTCCCAACAGGTG
3' ss Score
12.57
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AAAAACTACAGGCAGAGGGTGGATGAGCTGAAGTTCACCAGTGTGGCCGACAGCTCCCAGATGGAGCATGCCAAGAAGAGCCAGGAACTGCAGAGCGGG
Seq A exon
GTGGCCTACAAGGCAGAGCACGAGCAGTCCGTCCATCAGTACAGCATTAGCAAAGACGAGCCTCTCTTCCTACAGGCCCGAGCCAACGCTGCCAATCTCAGCGAG
Seq C2 exon
AAACTGTATAAGAGCAGCTGGGAAAACCAGAAGGCGAAAGCATTTGATCTGCGTCTTGACTCCTTGGCCTTCCTGGCAGCCAAAGCCAAGAGGGACCTGGCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=30.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTACAGGCAGAGGGTGGA
R:
ACTGGCCAGGTCCCTCTTG
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]