MmuEX0032295 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56425922-56431879:-
Coord C1 exon
chr19:56431781-56431879
Coord A exon
chr19:56429972-56430076
Coord C2 exon
chr19:56425922-56426233
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGACCCTGTTCACTATCAGGTG
3' ss Score
8.93
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AAAAACTACCGGCAGAGGGTGGATGAGCTGAAGTTCACCAGTGTGGCTGACAGCTCCCAGATGGAGCATGCCAAGAAGAGCCAGGGGCTGCAGAACGCG
Seq A exon
GTGGCCTACAAGGCAGGAAACGAGCAATCCGTCCATCAGTACACCATCAGCAAAGACGAGCCTCTCTTCTTACGAGCCCGGGCCAATGCTGCTCAACTCAGCGAG
Seq C2 exon
GTGAAATACAAAGAGGACTATGAAAGGTCCAGAGGGAAACTCATTGGGGCGAAGAGTGCACAGGGGGATTCGCAGATGAGCCACTCCCTGCAGATGTCGAAGCTACAGAGTGACCTGGAGTACAAGAAGGGCTTTGAAGACACCAGATCTCAGTGCCACATCTCCCTTGACATGGTTCACCTCGTCCATGCTCGCCAGGCACAGCACCTAGCCACAGACGTAGGCTACAGGACAGCGTCTCACTGCTTCACGGCTCTGCCCACAGACATGAAGGTGGAGTGGGCCAAGAAGGCTTACGGCCTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134_MULTIEX1-2/20=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.029 C2=0.077
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=30.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTCACCAGTGTGGCTG
R:
CCATGTCAAGGGAGATGTGGC
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: