RnoEX6007853 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277139454-277142698:-
Coord C1 exon
chr1:277142600-277142698
Coord A exon
chr1:277140849-277140953
Coord C2 exon
chr1:277139454-277139561
Length
105 bp
Sequences
Splice sites
3' ss Seq
GACCCTCTTCTCTCTATCAGGTG
3' ss Score
11.18
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
AAACACTACCGGCAGAAGGTTGACGAGCTAAAGTTCACCAGTGTGACTGACAGCTCCCAGATGGAGCACGCCAAGAAGAGCCAGGAGCTGCAGAATGCG
Seq A exon
GTGGCCTACAAGGCAGGAAACGAGCAGTCCGTCCATCAGTACACCATCAGCAAAGACGAACCCTTCTTCCTACGAGCCCGGGCCAATGCTGCTCAACTCAGCGAG
Seq C2 exon
ACCCTGTACAAGAGCAGCTGGGAAAAGCAGAAGGCAAAAGGATTTGAGCTGAGACTTGACTCCTTGACATTCCTGACAGCCAAAGCCAAGAGAGACCTGGCTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'23-27,'23-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACCGGCAGAAGGTTGAC
R:
TCACTAGCCAGGTCTCTCTTGG
Band lengths:
203-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]