GgaEX1040313 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28935353-28938009:-
Coord C1 exon
chr6:28937911-28938009
Coord A exon
chr6:28935800-28935904
Coord C2 exon
chr6:28935353-28935460
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTTTGCTTTCTGGGACAGGTT
3' ss Score
8.84
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AAAAAATACCGACAGAAGGTTGATGCTCTGAAATTCACCAGTGTGGCTGACAGCTCTCACATCAAACATGCCAAGAAAAGCCAGGAACTGCAAAGTGAT
Seq A exon
GTTGCCTACAGGTCAGGAAAAGAGCAGTTTCTTCATCAGTACACCATCACCAAAGATGACCCTGTCTTCTTACTGGCCAAAGCAAATGCTGCCAATATCAGTGAG
Seq C2 exon
AAACTGTACAGAAGTAGCTGGGAGAAGCAGAAGGAAAAAGGATTTGTTCTTCGTCTGGATGCTTTGTCATTCTTGACAGCTATGGCAAAGAGGGATCTGGCAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(55.2=48.5)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.2=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATACCGACAGAAGGTTGATGCT
R:
ACTTGCCAGATCCCTCTTTGC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]