BtaEX6101085 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013763 | C10orf82
Description
chromosome 10 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:28500]
Coordinates
chr26:37385820-37388502:-
Coord C1 exon
chr26:37388284-37388502
Coord A exon
chr26:37386435-37386621
Coord C2 exon
chr26:37385820-37385920
Length
187 bp
Sequences
Splice sites
3' ss Seq
GCATGACATCTTTTTCACAGAAT
3' ss Score
5.77
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCTTCGTGCCCTACCTGAGCTGCCAGGGCACCTCCAGCGAGGACAACATGGCCAACTGTCTGAAAATCTTCCAGGAGAACACACGGCGGTGTAAAGACCAGCTGGAGGAATTCCACTGCTCTGTGGCCACTGCCCCAAAACTGAAACCTGTCCGCTCGGAAGGGACGGTCCTGCGGACACTGCACCAGTATTACCGGCAGTACCATCCCTTAAGTCTGG
Seq A exon
AATGCAAGAATATAAAGAAACCTCTCCATGAGCCCCCTATCCCCGGCTGGGCAGGCTACCTGCCGAGAGCCAGGGTCACTGAATTAGGCTGCTCCACGCGGTACACCGTCATGGCCAGAAACTGCTACAGGGACTTCCTGGACCTCATGGAGCGGGCCAAACAAGCACACCTGAAACCATATGAGAA
Seq C2 exon
AATATATGGAGTTAAGTCCACACCACCTCCTCCTACTCCTCCTCCAAAAGTTTTGTTGCATGAAGGGCTGCTGCCAAAATATCCGGATTTCTCTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013763-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATGGCCAACTGTCTGA
R:
AGCAGCCCTTCATGCAACAAA
Band lengths:
249-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]